Open source · Peer-reviewed · Actively developed by DataSophos
NexusLIMS is a peer-reviewed Laboratory Information Management System (LIMS) purpose-built for shared-access electron microscopy facilities. It automatically harvests session metadata directly from lab instruments and instrument scheduling tools, building records of each experimental session. It enables your facility to easily generate FAIR data with no tedious manual data entry required by researchers.
Records are stored in an open format and can be exported to a number of destinations. The primary destination for users is a searchable web interface, making it easy for users to find, annotate, cite, and share their experiment records long after a session ends.
NexusLIMS was originally developed by Josh Taillon (the founder of datasophos ) at the National Institute of Standards and Technology (NIST), and has been used at NIST and universities across the country since 2020. In 2025, datasophos created the next generation of NexusLIMS and continues to maintain and extend the system. Its peer-reviewed foundations give it a solid scientific pedigree; our ongoing work makes it simple to deploy and production-ready.
Hooks into instrument facility management software to automatically record session details without any user intervention.
Records stored in an open XML format — no vendor lock-in, maximum interoperability.
Researchers can search, filter, and explore all experiment records through a clean, responsive web interface.
Automated metadata extraction from a range of electron microscopes and ion beam systems via a flexible extractor model.
Built on published research and years of production use in high-throughput microscopy facilities.
MIT-licensed and source available on GitHub means you can inspect, adapt, and extend without restrictions.
Expert deployment, customization, and support from the people who built it.
We install, configure, and validate NexusLIMS in your facility's environment (or help you to) so your team can start capturing FAIR data immediately.
Every lab is different. We adapt NexusLIMS to your specific instruments, workflows, and data requirements, including building new instrument connectors as needed.
Hands-on training for facility staff and ongoing technical support, so your team stays productive and confident using the system.
Not sure if NexusLIMS is right for you? We'll assess your facility's needs, instrument inventory, and data workflows, and give you an honest recommendation.
Contact datasophos for a free initial consultation.
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